Showing posts with label F1. Show all posts
Showing posts with label F1. Show all posts
Wednesday, March 9, 2016

Tweets Analysis with Python and NLP


Introduction

You should be already familiar with the concepts of NLP from our previous post, so today we'll see more useful case of analysis the tweets and classifying them into marketing and non-marketing tweets. We won't get into details of tweets retrieval, this can be done with various packages with Tweepy being the most popular one.

Baseline

For the purpose of the discussion we already have 2 sets of tweets separated into files and are uploaded into GitHub folder. First we download the datasets, add target column as 1 for marketing tweets and unite the datasets. Then we'll check the baseline classification results, without any pre-processing. We do this so later we could understand whether our changes improve the metrics. We'll be using Random Forest for classification, since it doesn't expect linear features or even features that interact linearly and it can handle very well high dimensional spaces as well as large number of training examples. Plus it doesn't require a lot of configuration. Have a look at Random Forest and classifier boosting articles for more details.

# -*- coding: utf-8 -*-
import re
import numpy as np
import pandas as pd
from nltk.tokenize import WordPunctTokenizer
from sklearn.cross_validation import cross_val_predict
from sklearn.ensemble import RandomForestClassifier
from sklearn.feature_extraction.text import CountVectorizer
from sklearn.metrics import f1_score, accuracy_score, roc_auc_score

prefix = 'https://github.com/aie0/data/blob/master/tweets/'
badMarketingTweetsURL = prefix + 'bad_marketing_tweets.txt'
goodMarketingTweetsURL = prefix + 'good_non_marketing_tweets.txt'

vectorizer = CountVectorizer(max_features=5000)
tokenizer = WordPunctTokenizer()

# load ds
badMarketingTweetsDS = pd.read_csv(badMarketingTweetsURL, sep='\t',
                                   encoding='utf-8',
                                   names=['ID', 'Content'])
goodMarketingTweetsDS = pd.read_csv(goodMarketingTweetsURL, sep='\t',
                                    encoding='utf-8',
                                    names=['ID', 'Content'])

# marking target
badMarketingTweetsDS['isMarket'] = pd.Series(np.ones(len(badMarketingTweetsDS)),
                                             index=badMarketingTweetsDS.index)
goodMarketingTweetsDS['isMarket'] = pd.Series(np.zeros(len(goodMarketingTweetsDS)),
                                              index=goodMarketingTweetsDS.index)

X = badMarketingTweetsDS.append(goodMarketingTweetsDS)
y = X['isMarket']
X = X['Content']

def test_RF(transformator, options={}):
    tweets = transformator(X, options)
    features = vectorizer.fit_transform(tweets).toarray()

    y_pred = cross_val_predict(RandomForestClassifier(verbose=3,
                                                      n_estimators=100,
                                                      max_depth=10,
                                                      n_jobs=-1), features, y)
    acc = accuracy_score(y, y_pred)
    roc = roc_auc_score(y, y_pred)
    return acc, roc, f1


# 1. baseline
def transform_tweets1(tweets, options):
    return tweets

print(test_RF(transform_tweets1))
# (0.83827723901882489, 0.83818275302681977, 0.8342105263157894)
pass

Please notice the header of the file, # -*- coding: utf-8 -*-. Since tweets contain non-ascii characters, according to PEP 263, we should mark the file as such.

Our pipeline consists of 3 phases: pre-process the tweets (currently doing nothing), vectorizing the tweets and training the classifier using cross-validation to avoid overfitting. For details about cross-validation, read appropriate paragraph in linear regression article

We need vectorization since classifier cannot work with words and requires numeric vectors. To achieve the goal, we use scikit-learn CountVectorizer class, which implements bag of words technique.

Using no pre-processing we achieve 0.83 accuracy. Remember to check F1 and ROC metrics as well to spot skewed datasets, for more details see machine learning metrics article.

Pre-processing

Let's try several things to see what effect our changes have on the metrics.

def transform_tweets2(tweets, options):
    results = []
    length = len(tweets)
    i = 0
    for tweet in tweets:
        if i % 100 is 0:
            print("%d of %d\n" % (i, length))
        i += 1
        s = tweet.lower()

        if 'markEmoji' in options:
            try:
                s.decode('ascii')
            except:
                new_str = ''
                for l in s:
                    new_str += (" VGEMOJINAME " if ord(l) > 128 else l)
                s = new_str

        if 'patterns' in options:
            for (pattern, repl) in options['patterns']:
                s = re.sub(pattern, repl, s)

        words = tokenizer.tokenize(s)
        if 'remove_stop_words' in options:
            stops = set(stopwords.words("english"))
            result = " ".join([w for w in words if not w in stops])
        else:
            result = " ".join([w for w in words])
        results.append(result)
    return results

Removing stop words

We've all been taught that removing the stop words should the first step of any NLP pipeline. So that's only natural we start by doing so. The performance however not only hasn't improved, but actually showed a significant decline. Remember that we always should take into account the total number of instances when interpreting the performance, thus 0.834 - 0.822 = 0.012 decrease at 7000 instances is about 90 cases, which is a lot.

options = {
    'remove_stop_words': True
}
print(test_RF(transform_tweets2, options))
#(0.82943525385054195, 0.8290763420757612, 0.82242424242424241)

Marking links

Since removing the stop words didn't help, let's try something else - all links in tweeter are encoded, they don't provide any additional information and may only worsen the performance. Let's replace all links with hardcoded string VGLINKNAME. The performance increases by nearly 1 percent - good start!

replacement_patterns = [
    (r"http:\/\/t.co\/[a-zA-Z0-9]+", " VGLINKNAME ")
]
options = {
    'patterns': [(re.compile(regex), repl) for (regex, repl) in replacement_patterns]
}
print(test_RF(transform_tweets2, options))
#(0.84811751283513981, 0.84782082009277737, 0.85790527018012008)

Marking money

Marketing content usually contains monetary strings like "Win 100$". Let's try identify them and mark then with VGMONEYNAME. And the result - another percent up.

replacement_patterns = [
    (r"http:\/\/t.co\/[a-zA-Z0-9]+", " VGLINKNAME "), #link
    (r'\$\s{0,3}[0-9,]+', ' VGMONEYNAME ') # money
]
patterns = [(re.compile(regex), repl) for (regex, repl) in replacement_patterns]
options = {
    'patterns': [(re.compile(regex), repl) for (regex, repl) in replacement_patterns]
}
print(test_RF(transform_tweets2, options))
# (0.85667427267541363, 0.85637385309532066, 0.86601786428476202)

Marking Emojis

How about emotions? Do non-marketing emails contain more emotions through the use of Emojis signs? Let's try to create a feature around this idea by marking all non-ascii characters as VGEMOJINAME and check the results. Again the increase in performance by around half percent.

replacement_patterns = [
    (r"http:\/\/t.co\/[a-zA-Z0-9]+", " VGLINKNAME "), #link
    (r'\$\s{0,3}[0-9,]+', ' VGMONEYNAME ') #money
]
patterns = [(re.compile(regex), repl) for (regex, repl) in replacement_patterns]
options = {
    'patterns': [(re.compile(regex), repl) for (regex, repl) in replacement_patterns],
    'markEmoji': True
}
print(test_RF(transform_tweets2, patterns))
#(0.85853850541928122, 0.85730503637390198, 0.87023249526899159)

Conclusions

We can check more different ways to improve the performance, some will work, others won't. The main point you should take from this article is always rely on the data, never on what people say. Removing stop words may be a good idea in some domains and worsen the performance in others. Validate every assumption and play with the data as many as possible. Good luck!

Wednesday, July 8, 2015

Logistic regression with Python


Introduction

After having mastered linear regression in the previous article, let's take a look at logistic regression. Despite its name, it is not that different from linear regression, but rather a linear model for classification achieved by using sigmoid function instead of polynomial one. Specifically we'll be using logistic function, hence the name of the regression. Don't worry, in the future articles we'll be covering the usage of other sigmoid functions as well.

Implementation

The implementation of logistic regression in scikit-learn can be accessed from class LogisticRegression. This implementation can fit a multiclass logistic regression with optional L1 or L2 regularization. In the next example we'll classify iris flowers according to their sepal length and width:

import numpy as np
import matplotlib.pyplot as plt
from sklearn import linear_model, datasets

# import some data to play with
iris = datasets.load_iris()
X = iris.data[:, :2]  # we only take the first two features.
Y = iris.target

model = linear_model.LogisticRegression(C=10000) # C = 1/alpha
model.fit(X, Y)

# Plot the decision boundary. For that, we will assign a color to each
# point in the mesh [x_min, m_max]:[y_min, y_max]
x_min, x_max = X[:, 0].min() - .5, X[:, 0].max() + .5
y_min, y_max = X[:, 1].min() - .5, X[:, 1].max() + .5

h = .02  # step size in the mesh
xx, yy = np.meshgrid(np.arange(x_min, x_max, h), np.arange(y_min, y_max, h))
Z = logreg.predict(np.c_[xx.ravel(), yy.ravel()])

# Put the result into a color plot
Z = Z.reshape(xx.shape)
plt.pcolormesh(xx, yy, Z, cmap=plt.cm.Paired)

# Plot also the training points
plt.scatter(X[:, 0], X[:, 1], c=Y)
plt.xlabel('Sepal length')
plt.ylabel('Sepal width')

plt.xlim(xx.min(), xx.max())
plt.ylim(yy.min(), yy.max())

plt.show()

Firstly, pay attention to the inversed regularization parameter, C, provided to the classifier. As with linear regression, scikit provides class, LogisticRegressionCV, to evaluate different learning rates. Secondly, though not related directly to the topic, have a look at meshgrid feature of numpy library and how it is used to plot a decision boundary.

Performance metrics

As opposed to linear regression, classification results cannot be evaluated with R-squared measure. A variety of metrics exist to evaluate the performance of classifiers against labels. The most common metrics are accuracy, precision, recall, F1 score and ROC AUC score. All of these measures depend on the concepts of true positives, true negatives, false positives and false negatives. All these apply to a binary classifier, but with a little trick of setting a positive label, the measures can be used on multiclass models as well.

True positives (TP)

The amount of labels, which were correctly identified by the classifier, that is assigned point labeled A to class A.

True negatives (TN)

The amount of labels, which were correctly rejected by the classifier, that is assigned point labeled A' to class A'.

False positives (FP)

The amount of labels, which were incorrectly identified by the classifier, that is assigned point labeled A' to class A.

False negatives (FN)

The amount of labels, which were incorrectly rejected by the classifier, that is assigned point labeled A to class A'.

Accuracy

Accuracy measures a fraction of the classifier's predictions that are correct, that is the number of correct assessments divided by the number of all assessments - (TN + TP)/(TN + TP + FN + FP).

Precision (P)

Precision is the fraction of positive predictions that are correct - TP/(TP + FP). Be careful as classifier predicting only a single positive instance, that happens to be correct, will achieve perfect precision.

Recall (R)

Recall, sometimes called sensitivity in medical domains, measures the fraction of the truly positive instances. A score of 1 indicates, that no false negative were present - TP/(TP + FN). Be careful as classifier predicting positive for every example will achieve a recall of 1.

F1 score

Both precision and recall scores provide an incomplete view on the classifier performance and sometimes may provide skewed results. The F1 measure provides a better view by calculating weighted average of the scores - 2*P*R/(P + R). A model with perfect precision and recall scores will achieve an F1 score of one.

ROC AUC

ROC curves plot the classifier's recall against its fall-out, false positive rate, is the number of false positives divided by the total number of negatives - FP/(TN + FP). AUC is the area under the ROC curve; it reduces the ROC curve to a single value, which represents the expected performance of the classifier. A classifier that predicts classes randomly, has an AUC of 0.5. Any number above this, outperforms the random guessing. Unfortunately scikit-learn supports only binary classifier, when it comes to ROC, however iterating over each label and setting it as positive one, results what we need:
import numpy as np
from sklearn import linear_model, datasets, cross_validation, metrics

# import some data to play with
iris = datasets.load_iris()
X = iris.data[:, :2]  # we only take the first two features.
Y = iris.target
model = linear_model.LogisticRegression(C=10000)

x_train, x_test, y_train, y_test = cross_validation.train_test_split(X, Y)
model.fit(x_train, y_train)
y_pred = model.predict(x_test)
print("Accuracy: %2f" % metrics.accuracy_score(y_test, y_pred))
print("Precision: %2f" % metrics.precision_score(y_test, y_pred, average="macro"))
print("F1: %2f" % metrics.f1_score(y_test, y_pred, average="macro"))
 
for label in np.arange(3):
    false_positive_rate, recall, thresholds = metrics.roc_curve(y_test, y_pred, pos_label=label)
    roc_auc = metrics.auc(false_positive_rate, recall)
    plt.plot(false_positive_rate, recall, label='AUC(%d) = %0.2f' % (label, roc_auc))

plt.title('Receiver Operating Characteristic')
plt.legend(loc='lower right')
plt.plot([0, 1], [0, 1], 'k--')
plt.xlim([0.0, 1.0])
plt.ylim([0.0, 1.0])
plt.ylabel('Recall')
plt.xlabel('Fall-out')
plt.show()
# Accuracy: 0.815789
# Precision: 0.817460
# F1: 0.813789

Conclusion

This concludes the classification topic and with linear regression, covers linear models. Next time we'll talk about techniques used to handle numerous explanatory variables.